Dealt with this EXACT scenario at PHX yesterday afternoon. Catching a non-rev trip on WN, I stupidly wandered into the line the had the backscatter. I advised the agent I would be declining the backscatter (Wearing my SIDA badge). He gives me this up and down look of "who does this guy think he is?" He then says (my favorite of the whole scenario....) "Well you don't have to decline it."
Umm, ok, but it's my right and I am. "Whatever" is his response, sighing indignitely. I go through and am advised I'll be getting a manual patdown. I politely decline and say I would prefer a hand wand and they are more then free to search all of my belongings that have passed without alarm through the belt x-ray. I'm then informed that since I have declined the backscatter, my only option is a manual patdown. I then ask the agent (who was very polite it should be noted) to speak to his supervisor (not as polite)
The overweight behemoth lumbers our way and very quickly tells me that it's either the manual patdown, backscatter, or no fly. I ask if the fact that I'm a SIDA badged, airside cleared employee means anything, he says no. I have him elaborate on why I cannot get a hand wand. He says that the purpose of both the backscatter and manual patdown is a search for organic material.
If the backscatter can search for organics, wow! Here I thought it was a peep show. As for the patdown, if I'm making bombs with "little ozziecat35" (Little not being a literal term here folks....:crazy

then we have bigger issues.
Resigning myself to the fact that I needed to get to MDW yesterday, I went ahead with the pat down, asking the agent if he'd at least call me later or take me out to dinner...He stated he'd have to pat down my inner thigh with the back of his hand to the point of "restriction." Let's just say restriction was met, and moved over a bit...Flashbacks of my Class 1 Flight Physical leaped into my head and I immediately went to my safe place, steeling myself for the inevitable rubber glove snap that thankfully never came.
When all was said and done, as I was retrieving my belongings and wiping the tears of shame from my face, I was putting my laptop back into my old military issue ACU back back that my wife has sewn all my old unit patches and tabs on, and behemoth asks me if I served?
"Yep, though after this experience I feel a whole lot safer now...."
Filed a complaint card summarizing the above and question the fact that if the standard X-Ray was good enough for non-badged passengers, a SIDA badged employee should not have to deal with any of that...