Not all of them. I went to ATP, and this was a non issue. Once you got the certificate, you were logging PIC time if you were at the controls. Even if there was a CFI there. How the hell do you think I got my 50 hours of X-country experince in the IFR system without a Inst. rating for the instrument? With a CFI in the right seat of a 172.
*sorry if that seems like I am lighting you up. Just frustrated about the whole "Wull, wull, wull, at (insert school here), we did it that way, so it must be true!"* It's not directed at you.* The problem I see with most graduates of collegiate programs is they don't think outside of the box, and, within the regs. I have been cleaning up the mess left by one over the course of the last few months. He wasn't bad at what he did, just narrow minded and did it exactly like they did at his school. I am not training guys right now that plan on going on to the airllines. I am training guys who want to do it recreationally. So the training is a little bit different because you won't have the chance at other certificates to polish things that are passable, all be it, poor in terms of airmanship.